If you run across any errors getting started, you should either refer to the deepcell-tf for developers section or raise an issue on GitHub. For examples of how to train models with the deepcell-tf library, check out the following notebooks:. Training a segmentation model. Training a tracking model.
The first is deepcell. These data include live-cell imaging movies of fluorescent nuclei approximately 10, single-cell trajectories over 30 frames , as well as static images of whole cells both phase and fluorescence images - approximately 75, single cell annotations. The second is deepcell.
Provided data is scaled so that the physical size of each pixel matches that in the training dataset, these models can be used out of the box on live-cell imaging data.
We are currently working to expand these modules to include data and models for tissue images. Please note that they may be spun off into their own GitHub repositories in the near future.
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